Publications | Page 3 | - CCMAR -
Found 91 results
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2012
Huttunen S, Bell N, Bobrova VK, et al. Disentangling knots of rapid evolution: origin and diversification of the moss order Hypnales. Journal of Bryology. 2012;34(3):187 - 211. doi:10.1179/1743282012Y.0000000013
Hardoim CCP, Esteves AIS, Pires FR, et al. Phylogenetically and spatially close marine sponges harbour divergent bacterial communities. PLoS One. 2012;7(12):e53029. doi:10.1371/journal.pone.0053029
2011
Forrest LL, Wickett N, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure. Plant Ecology and Evolution. 2011;144(1):1 - 15. doi:10.5091/plecevo.2011.535
2010
Conceição N, Cox CJ, Simões B, Viegas M, M. Cancela L. Comparative promoter analysis and its application to the identification of candidate regulatory factors of cartilage-expressed genes. Journal of Applied Ichthyology. 2010;26(2):245 - 250. doi:10.1111/jai.2010.26.issue-210.1111/j.1439-0426.2010.01415.x
Cox CJ, Goffinet B, Wickett NJ, Boles SB, Shaw AJ. Moss diversity: A molecular phylogenetic analysis of genera. Phytotaxa. 2010;9(1):175. doi:10.11646/phytotaxa.9.110.11646/phytotaxa.9.1.10
Shaw AJ, Cox CJ, Buck WR, et al. Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses). American Journal of Botany. 2010;97(9):1511 - 1531. doi:10.3732/ajb.1000055
A. Shaw J, Devos N, Cox CJ, et al. Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling?. Molecular Phylogenetics and Evolution. 2010;55(3):1139 - 1145. doi:10.1016/j.ympev.2010.01.020
2009
Cock PJA, Antao T, Chang JT, et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 2009;25(11):1422 - 1423. doi:10.1093/bioinformatics/btp163
Waeschenbach A, Cox CJ, Littlewood DTJ, Porter JS, Taylor PD. First molecular estimate of cyclostome bryozoan phylogeny confirms extensive homoplasy among skeletal characters used in traditional taxonomy. Molecular Phylogenetics and Evolution. 2009;52(1):241 - 251. doi:10.1016/j.ympev.2009.02.002
Foster PG, Cox CJ, Embley TM. The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philosophical Transactions of the Royal Society B: Biological Sciences. 2009;364(1527):2197 - 2207. doi:10.1098/rstb.2009.0034
2008
Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences. 2008;105(51):20356 - 20361. doi:10.1073/pnas.0810647105
Shaw JA, Holz I, Cox CJ, Goffinet B. Phylogeny, Character Evolution, and Biogeography of the Gondwanic Moss Family Hypopterygiaceae (Bryophyta). Systematic Botany. 2008;33(1):21 - 30. doi:10.1600/036364408783887311
2006
Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and Phylogenetic Significance of the 71-kb Inversion in the Plastid Genome in Funariidae (Bryophyta). Annals of Botany. 2006;99(4):747 - 753. doi:10.1093/aob/mcm010
James TY, Kauff F, Schoch CL, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 2006;443(7113):818 - 822. doi:10.1038/nature05110
2005
A. Shaw J, Melosik I, Cox CJ, Boles SB. Divergent and Reticulate Evolution in Closely Related Species of Sphagnum Section Subsecunda. The Bryologist. 2005;108(3):363 - 376. doi:10.1639/0007-2745(2005)108[0363:DAREIC]2.0.CO;2
A. Shaw J, Cox CJ, Boles SB. Phylogeny, Species Delimitation, and Recombination in Sphagnum Section Acutifolia. Systematic Botany. 2005;30(1):16 - 33. doi:10.1600/0363644053661823
Shaw AJ, Cox CJ. Variation in "biodiversity value" of peatmoss species in Sphagnum section Acutifolia (Sphagnaceae). American Journal of Botany. 2005;92(11):1774 - 1783. doi:10.3732/ajb.92.11.1774
2004
Lutzoni F, Kauff F, Cox CJ, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 2004;91(10):1446 - 1480. doi:10.3732/ajb.91.10.1446
Schneider H, Russell SJ, Cox CJ, et al. Chloroplast Phylogeny of Asplenioid Ferns based on rbcL and trnL-F Spacer Sequences (Polypodiidae, Aspleniaceae) and its Implications for Biogeography. Systematic Botany. 2004;29(2):260 - 274. doi:10.1600/036364404774195476
Vanderpoorten A, Shaw AJ, Cox CJ. Evolution of multiple paralogous adenosine kinase genes in the moss genus Hygroamblystegium: phylogenetic implications. Molecular Phylogenetics and Evolution. 2004;31(2):505 - 516. doi:10.1016/j.ympev.2003.09.020
Buck WR, Cox CJ, A. Shaw J, Goffinet B. Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales. Systematics and Biodiversity. 2004;2(2):121 - 145. doi:10.1017/S1477200004001410
Goffinet B, Shaw AJ, Cox CJ. Phylogenetic inferences in the dung-moss family Splachnaceae from analyses of cpDNA sequence data and implications for the evolution of entomophily. American Journal of Botany. 2004;91(5):748 - 759. doi:10.3732/ajb.91.5.748
Shaw J, Cox CJ, Boles SB. Phylogenetic Relationships Among Sphagnum Sections: Hemitheca, Isocladus, and Subsecunda. The Bryologist. 2004;107(2):189 - 196. doi:10.1639/0007-2745(2004)107[0189:PRASSH]2.0.CO;2
Cox CJ, Goffinet B, A. Shaw J, Boles SB. Phylogenetic Relationships among the Mosses Based on Heterogeneous Bayesian Analysis of Multiple Genes from Multiple Genomic Compartments. Systematic Botany. 2004;29(2):234 - 250. doi:10.1600/036364404774195458
Hedderson TA, Murray DJ, Cox CJ, Nowell TL. Phylogenetic Relationships of Haplolepideous Mosses (Dicranidae) Inferred from rps4 Gene Sequences. Systematic Botany. 2004;29(1):29 - 41. doi:10.1600/036364404772973960