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A. Shaw J, Melosik I, Cox CJ, Boles SB. Divergent and Reticulate Evolution in Closely Related Species of Sphagnum Section Subsecunda. The Bryologist. 2005;108(3):363 - 376. doi:10.1639/0007-2745(2005)108[0363:DAREIC]2.0.CO;2
A. Shaw J, Cox CJ, Boles SB. Phylogeny, Species Delimitation, and Recombination in Sphagnum Section Acutifolia. Systematic Botany. 2005;30(1):16 - 33. doi:10.1600/0363644053661823
Shaw AJ, Cox CJ. Variation in "biodiversity value" of peatmoss species in Sphagnum section Acutifolia (Sphagnaceae). American Journal of Botany. 2005;92(11):1774 - 1783. doi:10.3732/ajb.92.11.1774
Lutzoni F, Kauff F, Cox CJ, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 2004;91(10):1446 - 1480. doi:10.3732/ajb.91.10.1446
Schneider H, Russell SJ, Cox CJ, et al. Chloroplast Phylogeny of Asplenioid Ferns based on rbcL and trnL-F Spacer Sequences (Polypodiidae, Aspleniaceae) and its Implications for Biogeography. Systematic Botany. 2004;29(2):260 - 274. doi:10.1600/036364404774195476
Vanderpoorten A, Shaw AJ, Cox CJ. Evolution of multiple paralogous adenosine kinase genes in the moss genus Hygroamblystegium: phylogenetic implications. Molecular Phylogenetics and Evolution. 2004;31(2):505 - 516. doi:10.1016/j.ympev.2003.09.020
Buck WR, Cox CJ, A. Shaw J, Goffinet B. Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales. Systematics and Biodiversity. 2004;2(2):121 - 145. doi:10.1017/S1477200004001410
Goffinet B, Shaw AJ, Cox CJ. Phylogenetic inferences in the dung-moss family Splachnaceae from analyses of cpDNA sequence data and implications for the evolution of entomophily. American Journal of Botany. 2004;91(5):748 - 759. doi:10.3732/ajb.91.5.748
Shaw J, Cox CJ, Boles SB. Phylogenetic Relationships Among Sphagnum Sections: Hemitheca, Isocladus, and Subsecunda. The Bryologist. 2004;107(2):189 - 196. doi:10.1639/0007-2745(2004)107[0189:PRASSH]2.0.CO;2
Cox CJ, Goffinet B, A. Shaw J, Boles SB. Phylogenetic Relationships among the Mosses Based on Heterogeneous Bayesian Analysis of Multiple Genes from Multiple Genomic Compartments. Systematic Botany. 2004;29(2):234 - 250. doi:10.1600/036364404774195458
Hedderson TA, Murray DJ, Cox CJ, Nowell TL. Phylogenetic Relationships of Haplolepideous Mosses (Dicranidae) Inferred from rps4 Gene Sequences. Systematic Botany. 2004;29(1):29 - 41. doi:10.1600/036364404772973960
Diezmann S, Cox CJ, Schonian G, Vilgalys RJ, Mitchell TG. Phylogeny and Evolution of Medical Species of Candida and Related Taxa: a Multigenic Analysis. Journal of Clinical Microbiology. 2004;42(12):5624 - 5635. doi:10.1128/JCM.42.12.5624-5635.2004
A. Shaw J, Cox CJ, Boles SB. Global patterns in peatmoss biodiversity. Molecular Ecology. 2003;12(10):2553 - 2570. doi:10.1046/j.1365-294X.2003.01929.x
Shaw AJ, Cox CJ, Goffinet B, Buck WR, Boles SB. PHYLOGENETIC EVIDENCE OF A RAPID RADIATION OF PLEUROCARPOUS MOSSES (BRYOPHYTA). Evolution. 2003;57(10):2226 - 2241. doi:10.1111/evo.2003.57.issue-1010.1111/j.0014-3820.2003.tb00235.x
Cox CJ, Hedderson TAJ. Phylogenetic relationships within the moss family Bryaceae based on chloroplast DNA evidence. Journal of Bryology. 2003;25(1):31 - 40. doi:10.1179/037366803125002635
Pedersen N, Cox CJ, Hedenäs L. Phylogeny of the Moss Family Bryaceae Inferred from Chloroplast DNA Sequences and Morphology. Systematic BotanySystematic Botany. 2003;28(3):471 - 482.
Shaw AJ, Cox CJ, Boles SB. Polarity of peatmoss (Sphagnum) evolution: who says bryophytes have no roots?. American Journal of Botany. 2003;90(12):1777 - 1787. doi:10.3732/ajb.90.12.1777
Vanderpoorten A, Goffinet B, Hedenäs L, Cox CJ, Shaw AJ. A taxonomic reassessment of the Vittiaceae (Hypnales, Bryopsida): evidence from phylogenetic analyses of combined chloroplast and nuclear sequence data. Plant Systematics and Evolution. 2003;241(1-2):1 - 12. doi:10.1007/s00606-003-0032-z
Vanderpoorten A, Hedenäs L, Cox CJ, A. Shaw J, Hedenäs L. Circumscription, Classification, and Taxonomy of Amblystegiaceae (Bryopsida) Inferred from Nuclear and Chloroplast DNA Sequence Data and Morphology. Taxon. 2002;51(1):115. doi:10.2307/1554968
Buck WR, A. Shaw J, Cox CJ. A new species of Leskeodon (Daltoniaceae) from Ecuador. Brittonia. 2002;54(3):178 - 180. doi:10.1663/0007-196X(2002)054[0178:ANSOLD]2.0.CO;2
Vanderpoorten A, Hedenäs L, Cox CJ, Shaw AJ. Phylogeny and Morphological Evolution of the Amblystegiaceae (Bryopsida). Molecular Phylogenetics and Evolution. 2002;23(1):1 - 21. doi:10.1006/mpev.2001.1067
Goffinet B, Cox CJ, A. Shaw J, Hedderson TA. The Bryophyta (Mosses): Systematic and Evolutionary Inferences from an rps4 Gene (cpDNA) Phylogeny. Annals of Botany. 2001;87(2):191 - 208. doi:10.1006/anbo.2000.1318
Newton AE, Cox CJ, Duckett JG, et al. Evolution of the Major Moss Lineages: Phylogenetic Analyses Based on Multiple Gene Sequences and Morphology. The Bryologist. 2000;103(2):187 - 211. doi:10.1639/0007-2745(2000)103[0187:EOTMML]2.0.CO;2
Goffinet B, Cox CJ. Phylogenetic Relationships Among Basal-most Arthrodontous Mosses with Special Emphasis on the Evolutionary Significance of the Funariineae. The Bryologist. 2000;103(2):212 - 223. doi:10.1639/0007-2745(2000)103[0212:PRABMA]2.0.CO;2
Cox CJ, Goffinet B, Newton AE, A. Shaw J, Hedderson TAJ. Phylogenetic Relationships Among the Diplolepideous-alternate Mosses (Bryidae) Inferred from Nuclear and Chloroplast DNA Sequences. The Bryologist. 2000;103(2):224 - 241. doi:10.1639/0007-2745(2000)103[0224:PRATDA]2.0.CO;2