Publications | Page 2 | - CCMAR -
Found 91 results
Filters: Author is Cox, Cymon J  [Clear All Filters]
2017
Califano G, Castanho S, Soares F, et al. Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery. Frontiers in Microbiology. 2017;8. doi:10.3389/fmicb.2017.00204
2016
Rathore OSingh, Faustino A, Prudêncio P, Van Damme P, Cox CJ, Martinho RGonçalo. Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms. Scientific Reports. 2016;6:21304. doi:10.1038/srep21304
Marques CL, Fernández I, Viegas MN, et al. Comparative analysis of zebrafish bone morphogenetic proteins 2, 4 and 16: molecular and evolutionary perspectives. Cellular and Molecular Life Sciences. 2016;73(4):841-857. doi:10.1007/s00018-015-2024-x
Laenen B, Machac A, S. Gradstein R, et al. Increased diversification rates follow shifts to bisexuality in liverworts. New Phytologist. 2016;210(3):1121 - 1129. doi:10.1111/nph.13835
Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177 - 191. doi:10.1111/bij.12666
Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177-191. doi:10.1111/bij.12666
Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177-191.
Civán P, Craig H, Cox CJ, Brown TA. Multiple domestications of Asian rice. Nature Plants. 2016;2(4):16037. doi:10.1038/nplants.2016.37
A. Shaw J, Devos N, Liu Y, et al. Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss). Annals of Botany. 2016;118(2):185 - 196. doi:10.1093/aob/mcw086
2015
Pearson GA, Lago-Lestón A, Cánovas F, et al. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. The ISME Journal. 2015;9(10):2275 - 2289. doi:10.1038/ismej.2015.40
Pearson GA, Lago-Lestón A, Cánovas F, et al. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. ISME J. 2015;9(10):2275-89. doi:10.1038/ismej.2015.40
Civán P, Craig H, Cox CJ, Brown TA. Three geographically separate domestications of Asian rice. Nature Plants. 2015;1(11):15164. doi:10.1038/nplants.2015.164
Ramos AA, Weydmann A, Cox CJ, Canario AVM, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Marine Genomics. 2015;23:27 - 29. doi:10.1016/j.margen.2015.03.014
Ramos AA, Weydmann A, Cox CJ, Canario AVM, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Mar Genomics. 2015;23:27-9. doi:10.1016/j.margen.2015.03.014
2014
Civa  P, Foster PG, Embley MT, Seneca A, Cox CJ. Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants. Genome Biology and Evolution. 2014;6(4):897 - 911. doi:10.1093/gbe/evu061
Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins. Molecular Biology and Evolution. 2014;31(7):1697 - 1709. doi:10.1093/molbev/msu105
Cox CJ, Li B, Foster PG, Embley TM, Civan P. Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions. Systematic Biology. 2014;63(2):272 - 279. doi:10.1093/sysbio/syt109
Hardoim CCP, Cardinale M, Cúcio ACB, et al. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges. Frontiers in Microbiology. 2014;5. doi:10.3389/fmicb.2014.00611
Silva IAL, Cox CJ, Leite RB, M. Cancela L, Conceição N. Evolutionary conservation of TFIIH subunits: implications for the use of zebrafish as a model to study TFIIH function and regulation. Comp Biochem Physiol B Biochem Mol Biol. 2014;172-173:9-20. doi:10.1016/j.cbpb.2014.03.007
Laenen B, Shaw B, Schneider H, et al. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nat Commun. 2014;5:5134. doi:10.1038/ncomms6134
Liu Y, Cox CJ, Wang W, Goffinet B. Mitochondrial Phylogenomics of Early Land Plants: Mitigating the Effects of Saturation, Compositional Heterogeneity, and Codon-Usage Bias. Systematic Biology. 2014;63(6):862 - 878. doi:10.1093/sysbio/syu049
2013
Cox CJ, Foster PG. A 20-state empirical amino-acid substitution model for green plant chloroplasts. Molecular Phylogenetics and Evolution. 2013;68(2):218 - 220. doi:10.1016/j.ympev.2013.03.030
Williams TA, Foster PG, Cox CJ, T. Embley M. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 2013;504(7479):231 - 236. doi:10.1038/nature12779
Hardoim CCP, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva. Brazilian Journal of Microbiology. 2013;44(1):329 - 334. doi:10.1590/S1517-83822013000100048
2012
Williams TA, Foster PG, Nye TMW, Cox CJ, Embley TM. A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings of the Royal Society B: Biological Sciences. 2012;279(1749):4870 - 4879. doi:10.1098/rspb.2012.1795