Fernández I, Fernandes JMO, Roberto VP, et al. Circulating small non-coding RNAs provide new insights into vitamin K nutrition and reproductive physiology in teleost fish. Biochimica et Biophysica Acta (BBA) - General Subjects. 2019;1863(1):39-51. doi:10.1016/j.bbagen.2018.09.017

Ettamimi S, Carlier JD, Cox CJ, et al. A meta-taxonomic investigation of the prokaryotic diversity of water bodies impacted by acid mine drainage from the São Domingos mine in southern Portugal. Extremophiles. 2019. doi:10.1007/s00792-019-01136-1

Rosa J, Cox CJ, M. Cancela L, Laizé V. Identification of a fish short-chain dehydrogenase/reductase associated with bone metabolism. Gene. 2018;645:137 - 145. doi:10.1016/j.gene.2017.12.021

Puttick MN, Morris JL, Williams TA, et al. The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte. Current Biology. 2018;28(5):733 - 745.e2. doi:10.1016/j.cub.2018.01.063

Lu L, Cox CJ, Mathews S, Wang W, Wen J, Chen Z. Optimal data partitioning, multispecies coalescent and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae). Cladistics. 2018;34(1):57 - 77. doi:10.1111/cla.12191

Califano G, Castanho S, Soares F, et al. Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery. Frontiers in Microbiology. 2017;8. doi:10.3389/fmicb.2017.00204

Rathore OSingh, Faustino A, Prudêncio P, Van Damme P, Cox CJ, Martinho RGonçalo. Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms. Scientific Reports. 2016;6:21304. doi:10.1038/srep21304

Marques CL, Fernández I, Viegas MN, et al. Comparative analysis of zebrafish bone morphogenetic proteins 2, 4 and 16: molecular and evolutionary perspectives. Cellular and Molecular Life Sciences. 2016;73(4):841-857. doi:10.1007/s00018-015-2024-x

Laenen B, Machac A, S. Gradstein R, et al. Increased diversification rates follow shifts to bisexuality in liverworts. New Phytologist. 2016;210(3):1121 - 1129. doi:10.1111/nph.13835

Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177-191.

Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177 - 191. doi:10.1111/bij.12666

Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177-191. doi:10.1111/bij.12666

Civán P, Craig H, Cox CJ, Brown TA. Multiple domestications of Asian rice. Nature Plants. 2016;2(4):16037. doi:10.1038/nplants.2016.37

A. Shaw J, Devos N, Liu Y, et al. Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss). Annals of Botany. 2016;118(2):185 - 196. doi:10.1093/aob/mcw086

Pearson GA, Lago-Lestón A, Cánovas F, et al. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. The ISME Journal. 2015;9(10):2275 - 2289. doi:10.1038/ismej.2015.40

Pearson GA, Lago-Lestón A, Cánovas F, et al. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. ISME J. 2015;9(10):2275-89. doi:10.1038/ismej.2015.40

Civán P, Craig H, Cox CJ, Brown TA. Three geographically separate domestications of Asian rice. Nature Plants. 2015;1(11):15164. doi:10.1038/nplants.2015.164

Ramos AA, Weydmann A, Cox CJ, Canario AVM, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Marine Genomics. 2015;23:27 - 29. doi:10.1016/j.margen.2015.03.014

Ramos AA, Weydmann A, Cox CJ, Canario AVM, Serrão EA, Pearson GA. A transcriptome resource for the copepod Calanus glacialis across a range of culture temperatures. Mar Genomics. 2015;23:27-9. doi:10.1016/j.margen.2015.03.014

Civa  P, Foster PG, Embley MT, Seneca A, Cox CJ. Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants. Genome Biology and Evolution. 2014;6(4):897 - 911. doi:10.1093/gbe/evu061

Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins. Molecular Biology and Evolution. 2014;31(7):1697 - 1709. doi:10.1093/molbev/msu105

Cox CJ, Li B, Foster PG, Embley TM, Civan P. Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions. Systematic Biology. 2014;63(2):272 - 279. doi:10.1093/sysbio/syt109

Hardoim CCP, Cardinale M, Cúcio ACB, et al. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges. Frontiers in Microbiology. 2014;5. doi:10.3389/fmicb.2014.00611

Silva IAL, Cox CJ, Leite RB, M. Cancela L, Conceição N. Evolutionary conservation of TFIIH subunits: implications for the use of zebrafish as a model to study TFIIH function and regulation. Comp Biochem Physiol B Biochem Mol Biol. 2014;172-173:9-20. doi:10.1016/j.cbpb.2014.03.007

Laenen B, Shaw B, Schneider H, et al. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nat Commun. 2014;5:5134. doi:10.1038/ncomms6134