Cox CJ, Hedderson TAJ. Phylogenetic relationships within the moss family Bryaceae based on chloroplast DNA evidence. Journal of Bryology. 2003;25(1):31 - 40. doi:10.1179/037366803125002635

Hedderson TA, Cox CJ, J. Gibbings G. Phylogenetic Relationships of the Wardiaceae (Musci); Evidence from 18s rRNA and rps4 Gene Sequences. The Bryologist. 1999;102(1):26. doi:10.2307/3244455

Hedderson TA, Murray DJ, Cox CJ, Nowell TL. Phylogenetic Relationships of Haplolepideous Mosses (Dicranidae) Inferred from rps4 Gene Sequences. Systematic Botany. 2004;29(1):29 - 41. doi:10.1600/036364404772973960

Cox CJ, Goffinet B, A. Shaw J, Boles SB. Phylogenetic Relationships among the Mosses Based on Heterogeneous Bayesian Analysis of Multiple Genes from Multiple Genomic Compartments. Systematic Botany. 2004;29(2):234 - 250. doi:10.1600/036364404774195458

Cox CJ, Goffinet B, Newton AE, A. Shaw J, Hedderson TAJ. Phylogenetic Relationships Among the Diplolepideous-alternate Mosses (Bryidae) Inferred from Nuclear and Chloroplast DNA Sequences. The Bryologist. 2000;103(2):224 - 241. doi:10.1639/0007-2745(2000)103[0224:PRATDA]2.0.CO;2

Shaw J, Cox CJ, Boles SB. Phylogenetic Relationships Among Sphagnum Sections: Hemitheca, Isocladus, and Subsecunda. The Bryologist. 2004;107(2):189 - 196. doi:10.1639/0007-2745(2004)107[0189:PRASSH]2.0.CO;2

Goffinet B, Cox CJ. Phylogenetic Relationships Among Basal-most Arthrodontous Mosses with Special Emphasis on the Evolutionary Significance of the Funariineae. The Bryologist. 2000;103(2):212 - 223. doi:10.1639/0007-2745(2000)103[0212:PRABMA]2.0.CO;2

Goffinet B, Shaw AJ, Cox CJ. Phylogenetic inferences in the dung-moss family Splachnaceae from analyses of cpDNA sequence data and implications for the evolution of entomophily. American Journal of Botany. 2004;91(5):748 - 759. doi:10.3732/ajb.91.5.748

Shaw AJ, Cox CJ, Goffinet B, Buck WR, Boles SB. PHYLOGENETIC EVIDENCE OF A RAPID RADIATION OF PLEUROCARPOUS MOSSES (BRYOPHYTA). Evolution. 2003;57(10):2226 - 2241. doi:10.1111/evo.2003.57.issue-1010.1111/j.0014-3820.2003.tb00235.x

A. Shaw J, Devos N, Cox CJ, et al. Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling?. Molecular Phylogenetics and Evolution. 2010;55(3):1139 - 1145. doi:10.1016/j.ympev.2010.01.020

A. Shaw J, Devos N, Liu Y, et al. Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss). Annals of Botany. 2016;118(2):185 - 196. doi:10.1093/aob/mcw086

Buck WR, Cox CJ, A. Shaw J, Goffinet B. Ordinal relationships of pleurocarpous mosses, with special emphasis on the Hookeriales. Systematics and Biodiversity. 2004;2(2):121 - 145. doi:10.1017/S1477200004001410

Lu L, Cox CJ, Mathews S, Wang W, Wen J, Chen Z. Optimal data partitioning, multispecies coalescent and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae). Cladistics. 2018;34(1):57 - 77. doi:10.1111/cla.12191

Sousa F, Foster PG, Donoghue PCJ, Schneider H, Cox CJ. Nuclear protein phylogenies support the monophyly of the three bryophyte groups (Bryophyta Schimp.). New Phytologist. 2019;222(1):565 - 575. doi:10.1111/nph.2019.222.issue-110.1111/nph.15587

Shaw AJ, Cox CJ, Buck WR, et al. Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses). American Journal of Botany. 2010;97(9):1511 - 1531. doi:10.3732/ajb.1000055

Buck WR, A. Shaw J, Cox CJ. A new species of Leskeodon (Daltoniaceae) from Ecuador. Brittonia. 2002;54(3):178 - 180. doi:10.1663/0007-196X(2002)054[0178:ANSOLD]2.0.CO;2

Civán P, Craig H, Cox CJ, Brown TA. Multiple domestications of Asian rice. Nature Plants. 2016;2(4):16037. doi:10.1038/nplants.2016.37

Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177-191.

Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177-191. doi:10.1111/bij.12666

Martínez-Garrido J, Serrão EA, Engelen AH, Cox CJ, García-Murillo P, Gonzalez-Wangüemert M. Multilocus genetic analyses provide insight into speciation and hybridization in aquatic grasses, genus Ruppia. Biological Journal of the Linnean Society. 2016;117(2):177 - 191. doi:10.1111/bij.12666

Cox CJ, Goffinet B, Wickett NJ, Boles SB, Shaw AJ. Moss diversity: A molecular phylogenetic analysis of genera. Phytotaxa. 2010;9(1):175. doi:10.11646/phytotaxa.9.110.11646/phytotaxa.9.1.10

Califano G, Castanho S, Soares F, et al. Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery. Frontiers in Microbiology. 2017;8. doi:10.3389/fmicb.2017.00204

Sousa F, Civán P, Brazão J, Foster PG, Cox CJ. The mitochondrial phylogeny of land plants shows support for Setaphyta under composition-heterogeneous substitution models,. PeerJ. 2020;8:e8995. doi:10.7717/peerj.899510.7717/peerj.8995/fig-110.7717/peerj.8995/fig-210.7717/peerj.8995/table-110.7717/peerj.8995/supp-110.7717/peerj.8995/supp-210.7717/peerj.8995/supp-310.7717/peerj.8995/supp-4

Liu Y, Cox CJ, Wang W, Goffinet B. Mitochondrial Phylogenomics of Early Land Plants: Mitigating the Effects of Saturation, Compositional Heterogeneity, and Codon-Usage Bias. Systematic Biology. 2014;63(6):862 - 878. doi:10.1093/sysbio/syu049

Pearson GA, Lago-Lestón A, Cánovas F, et al. Metatranscriptomes reveal functional variation in diatom communities from the Antarctic Peninsula. The ISME Journal. 2015;9(10):2275 - 2289. doi:10.1038/ismej.2015.40