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Found 77 results
Filtros: Autor is Cox, CJ  [Clear All Filters]
Civa  P, Foster PG, Embley MT, Seneca A, Cox CJ. Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants. Genome Biology and Evolution. 2014;6(4):897 - 911. doi:10.1093/gbe/evu061
Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins. Molecular Biology and Evolution. 2014;31(7):1697 - 1709. doi:10.1093/molbev/msu105
Cox CJ, Li B, Foster PG, Embley TM, Civan P. Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions. Systematic Biology. 2014;63(2):272 - 279. doi:10.1093/sysbio/syt109
Hardoim CCP, Cardinale M, Cúcio ACB, et al. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges. Frontiers in Microbiology. 2014;5. doi:10.3389/fmicb.2014.00611
Silva IAL, Cox CJ, Leite RB, M. Cancela L, Conceição N. Evolutionary conservation of TFIIH subunits: implications for the use of zebrafish as a model to study TFIIH function and regulation. Comp Biochem Physiol B Biochem Mol Biol. 2014;172-173:9-20. doi:10.1016/j.cbpb.2014.03.007
Laenen B, Shaw B, Schneider H, et al. Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts. Nat Commun. 2014;5:5134. doi:10.1038/ncomms6134
Liu Y, Cox CJ, Wang W, Goffinet B. Mitochondrial Phylogenomics of Early Land Plants: Mitigating the Effects of Saturation, Compositional Heterogeneity, and Codon-Usage Bias. Systematic Biology. 2014;63(6):862 - 878. doi:10.1093/sysbio/syu049
Cox CJ, Foster PG. A 20-state empirical amino-acid substitution model for green plant chloroplasts. Molecular Phylogenetics and Evolution. 2013;68(2):218 - 220. doi:10.1016/j.ympev.2013.03.030
Williams TA, Foster PG, Cox CJ, T. Embley M. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 2013;504(7479):231 - 236. doi:10.1038/nature12779
Hardoim CCP, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva. Brazilian Journal of Microbiology. 2013;44(1):329 - 334. doi:10.1590/S1517-83822013000100048
Williams TA, Foster PG, Nye TMW, Cox CJ, Embley TM. A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings of the Royal Society B: Biological Sciences. 2012;279(1749):4870 - 4879. doi:10.1098/rspb.2012.1795
Huttunen S, Bell N, Bobrova VK, et al. Disentangling knots of rapid evolution: origin and diversification of the moss order Hypnales. Journal of Bryology. 2012;34(3):187 - 211. doi:10.1179/1743282012Y.0000000013
Hardoim CCP, Esteves AIS, Pires FR, et al. Phylogenetically and spatially close marine sponges harbour divergent bacterial communities. PLoS One. 2012;7(12):e53029. doi:10.1371/journal.pone.0053029
Forrest LL, Wickett N, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure. Plant Ecology and Evolution. 2011;144(1):1 - 15. doi:10.5091/plecevo.2011.535
Conceição N, Cox CJ, Simões B, Viegas M, M. Cancela L. Comparative promoter analysis and its application to the identification of candidate regulatory factors of cartilage-expressed genes. Journal of Applied Ichthyology. 2010;26(2):245 - 250. doi:10.1111/jai.2010.26.issue-210.1111/j.1439-0426.2010.01415.x
Cox CJ, Goffinet B, Wickett NJ, Boles SB, Shaw AJ. Moss diversity: A molecular phylogenetic analysis of genera. Phytotaxa. 2010;9(1):175. doi:10.11646/phytotaxa.9.110.11646/phytotaxa.9.1.10
Shaw AJ, Cox CJ, Buck WR, et al. Newly resolved relationships in an early land plant lineage: Bryophyta class Sphagnopsida (peat mosses). American Journal of Botany. 2010;97(9):1511 - 1531. doi:10.3732/ajb.1000055
A. Shaw J, Devos N, Cox CJ, et al. Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling?. Molecular Phylogenetics and Evolution. 2010;55(3):1139 - 1145. doi:10.1016/j.ympev.2010.01.020
Cock PJA, Antao T, Chang JT, et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 2009;25(11):1422 - 1423. doi:10.1093/bioinformatics/btp163
Waeschenbach A, Cox CJ, Littlewood DTJ, Porter JS, Taylor PD. First molecular estimate of cyclostome bryozoan phylogeny confirms extensive homoplasy among skeletal characters used in traditional taxonomy. Molecular Phylogenetics and Evolution. 2009;52(1):241 - 251. doi:10.1016/j.ympev.2009.02.002
Foster PG, Cox CJ, Embley TM. The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods. Philosophical Transactions of the Royal Society B: Biological Sciences. 2009;364(1527):2197 - 2207. doi:10.1098/rstb.2009.0034
Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences. 2008;105(51):20356 - 20361. doi:10.1073/pnas.0810647105
Shaw JA, Holz I, Cox CJ, Goffinet B. Phylogeny, Character Evolution, and Biogeography of the Gondwanic Moss Family Hypopterygiaceae (Bryophyta). Systematic Botany. 2008;33(1):21 - 30. doi:10.1600/036364408783887311
Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and Phylogenetic Significance of the 71-kb Inversion in the Plastid Genome in Funariidae (Bryophyta). Annals of Botany. 2006;99(4):747 - 753. doi:10.1093/aob/mcm010
James TY, Kauff F, Schoch CL, et al. Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature. 2006;443(7113):818 - 822. doi:10.1038/nature05110