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Found 91 results
Filtros: Autor is Cox, Cymon J  [Clear All Filters]
Journal Article
Cox CJ, Foster PG. A 20-state empirical amino-acid substitution model for green plant chloroplasts. Molecular Phylogenetics and Evolution. 2013;68(2):218 - 220. doi:10.1016/j.ympev.2013.03.030
Rathore OSingh, Faustino A, Prudêncio P, Van Damme P, Cox CJ, Martinho RGonçalo. Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms. Scientific Reports. 2016;6:21304. doi:10.1038/srep21304
Civa  P, Foster PG, Embley MT, Seneca A, Cox CJ. Analyses of Charophyte Chloroplast Genomes Help Characterize the Ancestral Chloroplast Genome of Land Plants. Genome Biology and Evolution. 2014;6(4):897 - 911. doi:10.1093/gbe/evu061
Williams TA, Foster PG, Cox CJ, T. Embley M. An archaeal origin of eukaryotes supports only two primary domains of life. Nature. 2013;504(7479):231 - 236. doi:10.1038/nature12779
Cox CJ, Foster PG, Hirt RP, Harris SR, Embley TM. The archaebacterial origin of eukaryotes. Proceedings of the National Academy of Sciences. 2008;105(51):20356 - 20361. doi:10.1073/pnas.0810647105
Lutzoni F, Kauff F, Cox CJ, et al. Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits. American Journal of Botany. 2004;91(10):1446 - 1480. doi:10.3732/ajb.91.10.1446
Pes K, Friese A, Cox CJ, Laizé V, Fernández I. Biochemical and molecular responses of the Mediterranean mussel (Mytilus galloprovincialis) to short-term exposure to three commonly prescribed drugs. Marine Environmental Research. 2021;168:105309. doi:10.1016/j.marenvres.2021.105309
Cock PJA, Antao T, Chang JT, et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 2009;25(11):1422 - 1423. doi:10.1093/bioinformatics/btp163
Goffinet B, Cox CJ, A. Shaw J, Hedderson TA. The Bryophyta (Mosses): Systematic and Evolutionary Inferences from an rps4 Gene (cpDNA) Phylogeny. Annals of Botany. 2001;87(2):191 - 208. doi:10.1006/anbo.2000.1318
Sousa F, Civán P, Foster PG, Cox CJ. The Chloroplast Land Plant Phylogeny: Analyses Employing Better-Fitting Tree- and Site-Heterogeneous Composition ModelsDataSheet_1.pdfDataSheet_2.pdf. Frontiers in Plant Science. 2020;11. doi:10.3389/fpls.2020.0106210.3389/fpls.2020.01062.s00110.3389/fpls.2020.01062.s002
Schneider H, Russell SJ, Cox CJ, et al. Chloroplast Phylogeny of Asplenioid Ferns based on rbcL and trnL-F Spacer Sequences (Polypodiidae, Aspleniaceae) and its Implications for Biogeography. Systematic Botany. 2004;29(2):260 - 274. doi:10.1600/036364404774195476
Fernández I, Fernandes JMO, Roberto VP, et al. Circulating small non-coding RNAs provide new insights into vitamin K nutrition and reproductive physiology in teleost fish. Biochimica et Biophysica Acta (BBA) - General Subjects. 2019;1863(1):39-51. doi:10.1016/j.bbagen.2018.09.017
Vanderpoorten A, Hedenäs L, Cox CJ, A. Shaw J, Hedenäs L. Circumscription, Classification, and Taxonomy of Amblystegiaceae (Bryopsida) Inferred from Nuclear and Chloroplast DNA Sequence Data and Morphology. Taxon. 2002;51(1):115. doi:10.2307/1554968
Marques CL, Fernández I, Viegas MN, et al. Comparative analysis of zebrafish bone morphogenetic proteins 2, 4 and 16: molecular and evolutionary perspectives. Cellular and Molecular Life Sciences. 2016;73(4):841-857. doi:10.1007/s00018-015-2024-x
Cunha RL, Nicastro KR, Zardi GI, et al. Comparative mitogenomic analyses and gene rearrangements reject the alleged polyphyly of a bivalve genus. PeerJ. 2022;10:e13953. doi:10:e13953 https://doi.org/10.7717/peerj.13953
Conceição N, Cox CJ, Simões B, Viegas M, M. Cancela L. Comparative promoter analysis and its application to the identification of candidate regulatory factors of cartilage-expressed genes. Journal of Applied Ichthyology. 2010;26(2):245 - 250. doi:10.1111/jai.2010.26.issue-210.1111/j.1439-0426.2010.01415.x
Li B, Lopes JS, Foster PG, Embley TM, Cox CJ. Compositional Biases among Synonymous Substitutions Cause Conflict between Gene and Protein Trees for Plastid Origins. Molecular Biology and Evolution. 2014;31(7):1697 - 1709. doi:10.1093/molbev/msu105
Cox CJ, Li B, Foster PG, Embley TM, Civan P. Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions. Systematic Biology. 2014;63(2):272 - 279. doi:10.1093/sysbio/syt109
Williams TA, Foster PG, Nye TMW, Cox CJ, Embley TM. A congruent phylogenomic signal places eukaryotes within the Archaea. Proceedings of the Royal Society B: Biological Sciences. 2012;279(1749):4870 - 4879. doi:10.1098/rspb.2012.1795
Forrest LL, Wickett N, Cox CJ, Goffinet B. Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure. Plant Ecology and Evolution. 2011;144(1):1 - 15. doi:10.5091/plecevo.2011.535
Huttunen S, Bell N, Bobrova VK, et al. Disentangling knots of rapid evolution: origin and diversification of the moss order Hypnales. Journal of Bryology. 2012;34(3):187 - 211. doi:10.1179/1743282012Y.0000000013
Goffinet B, Wickett NJ, Werner O, Ros RM, Shaw AJ, Cox CJ. Distribution and Phylogenetic Significance of the 71-kb Inversion in the Plastid Genome in Funariidae (Bryophyta). Annals of Botany. 2006;99(4):747 - 753. doi:10.1093/aob/mcm010
A. Shaw J, Melosik I, Cox CJ, Boles SB. Divergent and Reticulate Evolution in Closely Related Species of Sphagnum Section Subsecunda. The Bryologist. 2005;108(3):363 - 376. doi:10.1639/0007-2745(2005)108[0363:DAREIC]2.0.CO;2
Hardoim CCP, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva. Brazilian Journal of Microbiology. 2013;44(1):329 - 334. doi:10.1590/S1517-83822013000100048
Hardoim CCP, Cardinale M, Cúcio ACB, et al. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges. Frontiers in Microbiology. 2014;5. doi:10.3389/fmicb.2014.00611